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  1. LIMS
  2. LIMS-3245

Udder Health COA score interpretation

    Details

    • Type: Improvement
    • Status: Open
    • Priority: Critical
    • Resolution: Unresolved
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:

      Description

      View Attached 200727A xlsx online

      Result colour coding

      Please confirm it works like this Shaun Groenink

      Score < 0 No peaks found.
      0 <= Score <= 1.7 No reliable identification - likely environmental bacteria/yeast/mould
      1.7 <= Score <= 2.0 Only genus confirmed. Best matched species
      Score > 2 Genus and species confirmed

      Bika COAs don't do coloured backgrounds (yet) and I thought I'll use the specs on the Score, but that remains hidden in the COA to clients. Now working on a calculation based on the above

        Issue Links

          Activity

          lemoene lemoene created issue -
          lemoene lemoene made changes -
          Field Original Value New Value
          Epic Link LIMS-3104 [ 17567 ]
          lemoene lemoene made changes -
          Link This issue clones LIMS-3242 [ LIMS-3242 ]
          lemoene lemoene made changes -
          Description [View Attached 200727A xlsx online|https://docs.google.com/spreadsheets/d/1TWfkPLdKUM_znwrN9ytusCnP1Nnfwdwm-BlOBQPW1wQ]

          Questions [~shaun], [~cara]

          h5. Is it important to included the organism's _Group_?
          This is not included in the results we'll be importing. Adding it asks for a customization

          Maybe you can attache shortened list of organisms of all the organisms and their groups to the emails, the top ones we identified earlier

          !Screenshot from 2020-08-04 11-48-25.png|thumbnail!

          h5. Infection statistics

          Ditto re importance of inclusion?
          In this case though I'll experiment with adding it manually in the COA footer or email body each time as a workaround

          !Screenshot from 2020-08-04 11-48-38.png|thumbnail!

          h5. Result colour coding

          I'll try to fit this into Bika's Analysis Specifications, How are these interpreted and indicated on the COA?

          _Not reliable identification - likely environmental bacteria/yeast/mould_
          _No peaks found - artefact_

          !Screenshot from 2020-08-04 11-49-33.png|thumbnail!
          [View Attached 200727A xlsx online|https://docs.google.com/spreadsheets/d/1TWfkPLdKUM_znwrN9ytusCnP1Nnfwdwm-BlOBQPW1wQ]


          h3. Result colour coding

          I'll try to fit this into Bika's Analysis Specifications, How are these interpreted and indicated on the COA?

          _Not reliable identification - likely environmental bacteria/yeast/mould_
          _No peaks found - artefact_

          !Screenshot from 2020-08-04 11-49-33.png|thumbnail!


          lemoene lemoene made changes -
          Attachment Screenshot from 2020-08-04 11-48-25.png [ 18181 ]
          lemoene lemoene made changes -
          Attachment Screenshot from 2020-08-04 11-48-38.png [ 18182 ]
          lemoene lemoene made changes -
          Description [View Attached 200727A xlsx online|https://docs.google.com/spreadsheets/d/1TWfkPLdKUM_znwrN9ytusCnP1Nnfwdwm-BlOBQPW1wQ]


          h3. Result colour coding

          I'll try to fit this into Bika's Analysis Specifications, How are these interpreted and indicated on the COA?

          _Not reliable identification - likely environmental bacteria/yeast/mould_
          _No peaks found - artefact_

          !Screenshot from 2020-08-04 11-49-33.png|thumbnail!


          [View Attached 200727A xlsx online|https://docs.google.com/spreadsheets/d/1TWfkPLdKUM_znwrN9ytusCnP1Nnfwdwm-BlOBQPW1wQ]

          h3. Result colour coding

          if score is <1,7 = No reliable identification
          if score is < 0 = No peaks found.


          !Screenshot from 2020-08-04 11-49-33.png|thumbnail!



          lemoene lemoene made changes -
          Description [View Attached 200727A xlsx online|https://docs.google.com/spreadsheets/d/1TWfkPLdKUM_znwrN9ytusCnP1Nnfwdwm-BlOBQPW1wQ]

          h3. Result colour coding

          if score is <1,7 = No reliable identification
          if score is < 0 = No peaks found.


          !Screenshot from 2020-08-04 11-49-33.png|thumbnail!



          [View Attached 200727A xlsx online|https://docs.google.com/spreadsheets/d/1TWfkPLdKUM_znwrN9ytusCnP1Nnfwdwm-BlOBQPW1wQ]

          h3. Result colour coding

          Please confirm it works like this [~shaun]

          |Score < 0 |No peaks found.|
          |0 <= Score <= 1.7 |No reliable identification - likely environmental bacteria/yeast/mould|
          |1.7 <= Score <= 2.0 |Only genus confirmed. Best matched species|
          |Score > 2 |Genus and species confirmed|

          Bika COAs don't do coloured backgrounds (yet) and I thought I'll use the specs on the Score, but that remains hidden in the COA to clients. Now working on a calculation based on the above




          Hide
          lemoene lemoene added a comment -

          NB Edit. Description replaced with the below:
          Please confirm to be correct Shaun Groenink

          Result colour coding

          Score < 0 No peaks found.
          0 <= Score <= 1.7 No reliable identification - likely environmental bacteria/yeast/mould
          1.7 <= Score <= 2.0 Only genus confirmed. Best matched species
          Score > 2 Genus and species confirmed

          Bika COAs don't do coloured backgrounds (yet) and I thought I'll use the specs on the Score, but that remains hidden in the COA to clients. Now working on a calculation based on the above

          Show
          lemoene lemoene added a comment - NB Edit. Description replaced with the below: Please confirm to be correct Shaun Groenink Result colour coding Score < 0 No peaks found. 0 <= Score <= 1.7 No reliable identification - likely environmental bacteria/yeast/mould 1.7 <= Score <= 2.0 Only genus confirmed. Best matched species Score > 2 Genus and species confirmed Bika COAs don't do coloured backgrounds (yet) and I thought I'll use the specs on the Score, but that remains hidden in the COA to clients. Now working on a calculation based on the above
          Hide
          shaun Shaun Groenink added a comment -

          Yip, confirmed.

          Show
          shaun Shaun Groenink added a comment - Yip, confirmed.
          lemoene lemoene made changes -
          Sprint Covid Dairy Urgent [ 61 ]
          lemoene lemoene made changes -
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            People

            • Assignee:
              shaun Shaun Groenink
              Reporter:
              lemoene lemoene
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              Dates

              • Created:
                Updated: